German Tischler

Research Interests:Tischler_German_h_small

  • algorithms on strings (full text  indexing, pattern matching)
  • algorithms in bio-informatics (assembly and mapping)

Software:

Curriculum vitae:

Education

Positions previously held

  • Staff scientist at the Wellcome Trust Sanger Institute, Hinxton, Cambridge, UK (8/2014-4/2015)
  • Postdoctoral Fellow at the Wellcome Trust Sanger Institute, Hinxton, Cambridge, UK with Dr. Zemin Ning (8/2011-7/2014)
  • Akademischer Rat at the Department of Computer Science, University of Würzburg, Germany (8/2008-2/2009 and 3/2011-8/2011)
  • Postdoctoral Fellow at King's College London, Department of Computer Science with Prof. Dr. Maxime Crochemore (Newton International Fellowship)
  • Wissenschaftlicher Mitarbeiter at the Department of Computer Science, University of Würzburg, Germany (8/2002-8/2008)

Selected publications

Preprints:

Articles in peer reviewed journals:

Articles in conference proceedings:

  • German Tischler: Faster Average Case Low Memory Semi-External Construction of the Burrows-Wheeler Transform (in Alessio Langiu, Costas Iliopoulos (editors): Proceedings of the 2nd International Conference on Algorithms for Big Data (ICABD 2014), CEUR-WS Proceedings 1146, pp. 61-68, 2014)
  • Juha Käarkkäinen, German Tischler: Near in Place Linear Time Minimum Redundancy Coding (in Ali Bilgin, Michael W. Marcellin, Joan Serri-Sagrista, James A. Storer (editors): Data Compression Conference (DCC) 2013, IEEE, pp. 411-420, 2013)
  • Luis M. S. Russo, German Tischler: Succinct Gapped Suffix Arrays (in Roberto Grossi, Fabrizio Sebastiani, Fabrizio Silvestri (editors): 18th International Symposium on String Processing and Information Retrieval (SPIRE 2011), Springer-Verlag, Lecture Notes in Computer Science 7024, pp. 290-294, 2011)
  • German Tischler: On Wavelet Tree Construction (in Raffaele Giancarlo, Giovanni Manzini (editors): 22nd Annual Symposium on Combinatorial Pattern Matching (CPM 2011), Springer-Verlag, Lecture Notes in Computer Science 6661, pp. 208--218, 2011)
  • Maxime Crochemore, German Tischler: The Gapped Suffix Array: a New Index Structure for Fast Approximate Matching (in Edgar Chavez, Stefano Lonardi (editors): 17th International Symposium on String Processing and Information Retrieval (SPIRE 2010),
    Springer-Verlag, Lecture Notes in Computer Science 6393, pp. 359-364, 2010)
  • Maxime Crochemore, Costas S. Iliopoulos, Solon P. Pissis, German Tischler: Cover array string reconstruction (in Amihood Amir and Laxmi Parida (editors): Proceedings of the 21st Annual Symposium on Combinatorial Pattern Matching (CPM 2010), Springer-Verlag, Lecture Notes in Computer Science 6129, pp. 251-259, 2010)
  • Kimon Frousios, Costas S. Iliopoulos, Laurent Mouchard, Solon P. Pissis, German Tischler: REAL: An efficient REad ALigner for next generation sequencing reads (in Aidong Zhang, Mark Borodovsky, Gultekin Özsoyoglu, Armin R. Mikler (editors): Proceedings of the 1st ACM International Conference on Bioinformatics and Computational Biology (ACM BCB 2010), Association of Computing Machinery, pp. 154-159, 2010)
  • Costas S. Iliopoulos, T. A. Okanlawon, Solon P. Pissis, German Tischler: Mapping short reads to a genomic sequence with circular structure (in 10th IEEE International Conference on Information Technology and Applications in Biomedicine (ITAB 2010), IEEE, pp. 1-4, 2010)