Robert Haase

Research interests

  • Bridging the gap between image acquisition and image analysis.
  • Interdisciplinary research in life sciences (full range from biology, adaptive optics and microscopy to bio-image analysis, software engineering and high performance computing).

Current projects

Teaching

2020
Applied Bio-Image Analysis, Lecture in Molecular Bioengineering (Master) and Molecular Biology and Biotechnology (Bachelor) at BIOTEC, TU Dresden
Videos, Slides

2020
GPU-accelerated Image Processing with CLIJ2, NEUBIAS Academy @Home
Video, Slides

2020
Image Registration, Stitching and GPU-Accelerated Image Processing, NEUBIAS TS14 for Early Career Scientists, Bordeaux
Slides

2020
Intelligent Systems for Bio-Image Analysis, Guest Lectures at Faculty of Computer Science, TU Dresden
Slides

2019
GPU-accelerated Image Processing in ImageJ Macro, NEUBIAS Training School 13 for Facility Staff, INESC TEC Porto
Website, Slides

2019
Stitching & Image Registration, NEUBIAS Training School 12 for Early Career Scientists, INESC TEC Porto
Website, Slides

2019
ImageJ Macro Programming & GPU-acceleration,  Image Analysis Introductory Course, CCI University of Gothenbourg
Slides

2019
Applied Bio-image analysis, Lecture part of Bioinformatics master programme, Charles University Praque
Slides

2019
Cell tracking with Trackmate, Real-time Image Analysis and more ad-hoc training, MBL Physiology Course, Woods Hole
Link, Link

2019
Applied Bio-image analysis, Lecture part of Molecular Bioengineering master programme at BIOTEC Dresden
Slides

2019
ImageJ API beating - Imglib2, ImageJ2 and the BigDataViewer, NEUBIAS Trainging School 11 for BioImageAnalysts, University of Luxembourg
Website, Slides

2019
Multiview Registration with Fiji and Tracking with Trackmate and Mastodon, NEUBIAS Training School 10 for Early Career Scientists, University of Luxembourg
Website, Slides, Slides

2018
Working with Pixels and Objects in 2D and 3D, NEUBIAS Training School 8 for Early Career Scientists, University of Edinburg
Website, Slides, Slides

2018
Multiview Image Processing in Fiji, EMBO Practical Course on Light Sheet Microscopy, MPI CBG Dresden
Website

2017
Introduction to ImageJ macro programming, Scientific Computing Facility, MPI CBG Dresden
Website, Slides

2016 - 2017
Introduction to Image Analysis with Fiji, Scientific Computing Facility, MPI CBG Dresden
Website, Website, Slides

 

Curriculum Vitae

2017 -
Post-doctoral researcher in Computational Microscopy at Myers Lab, Max Planck Institute for Molecular Cell Biology and Genetics Dresden, working on smart microscopy and adaptive optics

2015 - 2017
Bio-Image Analyst, Scientific software engineer in BioImage Informatics at Scionics GmbH, position based at Scientific Computing Facility, Max Planck Institute for Molecular Cell Biology and Genetics, Dresden

2013 - 2015
Research assistant in the High Precision Radiotherapy group at OncoRay / Medical Faculty, TU Dresden, working on image analysis, deformable image registration and radiomics

2010 - 2013
PhD student in the Biological and Molecular Imaging group at OncoRay / Medical Faculty, TU Dresden, Topic of thesis: Optimisation and Validation of a Swarm Intelligence based Segmentation Algorithm for low Contrast Positron Emission Tomography, supervisors: Prof. Dr. Dr. med. Nasreddin Abolmaali and Prof. Dr-Ing. Hans-Joachim Böhme

2008 - 2010
Student assistant in the Biological and Molecular Imaging group at OncoRay / Medical Faculty, TU Dresden working on image registration slice-by-slice histology and histology with magnetic resonance imaging

2006 - 2010
Student of Computer Science at University of Applied Sciences HTW Dresden, Topic of thesis: Development of a segmentation algorithm for low-contrast Positron Emission Tomography , supervisor Prof. Dr-Ing. Hans-Joachim Böhme

2004 - 2005
Junior technical project leader at Spiritlink GmbH, Erlangen

2001 - 2004
Trainee IT Specialist for software application development at Spiritlink GmbH in Erlangen

Recent publications / software